Publications

Journal Articles

Jindal, S. and A. Ali^*. 2025. First Report of ‘Candidatus Phytoplasma asteris’ Infecting Okra in the United States. Plant Disease (In press). https://doi.org/10.1094/PDIS-06-25-1247-PDN

Dayal, V., C. Paslay and A. Ali^*. 2025. First report, detection and phylogenetic analysis of bell pepper endornavirus (BPEV) isolates infecting pepper in Oklahoma. PhytoFrontiers. (In press). https://doi.org/10.1094/PHYTOFR-03-25-0026-R

Peña-Zúñiga, L., A. Espindola., D. Hagen., A. Ali, and F. Ochoa-Corona. 2025. Assessment of Viral Limit of Detection in Spiked, Unassembled High Throughput Sequencing Datasets. PhytoFrontiers (In press). https://doi.org/10.1094/PHYTOFR-11-24-0121-FI

Ali,^* A. 2025. Cotton bunchy top disease. Cotton Compendium. The American Phytopathological Society, St. Paul, Minnesota, USA. Page 71-72.

Paslay, C and A. Ali^*. 2025. Characterization of the Pepper Virome in Oklahoma Reveals Emerging RNA and DNA Viruses. Pathogen, 14:1035- 1-18. https://doi.org/10.3390/

Jindal, S. and A. Ali^*. 2025. First detection and identification of Southern Tomato Virus infecting tomatoes in Oklahoma with complete genome characterization and insights into global genetic diversity. Viruses (17(9):1193. DOI:10.3390/v17091193

Paslay, C and A. Ali^*. 2025. Rogueing or Rescuing: A Potential New Management Approach for Roses Infected with Rose Rosette Virus. Viruses 2025, 17, 829. https://doi.org/10.3390/v17060829

Pathak, D., P. Rathore., H. Kaur^., B. Singh., H. Kumar., A. Ali., S. Punia., P. Singh., K. Singh. 2025. Introgression and Mapping of Cotton Leaf Curl Disease (CLCuD) Resistance from Wild Gossypium armourianum Kearney into Upland Cotton (G. hirsutum L.). Plant Disease 109(3):554-557. https://doi.org/10.1094/PDIS-08-24-1645-SC

Ali,^* A. and C. Paslay. 2025. Begomovirus coheni (leaf curl). CABI Compendium 55402. Published Aug 28, 2025 https://doi.org/10.1079/cabicompendium.55402

Ali,^* A. and J. Sidhu. 2025. Alfamovirus AMV (alfalfa yellow spot). CABI Compendium 4346. Published Feb 17, 2025. https://doi.org/10.1079/cabicompendium.4346

Ali,^* A. and C. Ferguson. 2024. Tobacco ringspot virus. CABI Compendium 54202. Published Dec 20, 2024. https://doi.org/10.1079/cabicompendium.54202

Ferguson, C and A. Ali^* . 2024. Genetic diversity of Cotton leafroll dwarf virus from the Southwestern United States, and its implications for the multi-introduction event hypothesis and future evolution. Plant Disease, 102:3484-349. https://doi.org/10.1094/PDIS-05-24-0952-SR

Pandey, V., A. Srivastava1., N. Singh · R. Gupta · A. Ali,^* and · R. K. Gaur. 2024. In‑silico prediction of domain involved in chilli protein interaction with chilli leaf curl virus and associated betasatellite encoded protein. Discover Plants. 1:20. https://doi.org/10.1007/s44372-024-00016-z

Pandey V, Srivastava A, A. Ali^*, Gupta R, Shahid MS and Gaur RK. 2024. Predicting candidate miRNAs for targeting begomovirus to induce sequence specific gene silencing in chilli plants. Front. Plant Sci. 15:1460540. https://doi.org/10.3389/fpls.2024.1460540

Jindal, J., and A. Ali^* .2024. First report of the Horse nettle virus infecting tomato (Solanum lycopersicum L.) in the United States. Plant Disease, 108 (5): 1409. https://doi.org/10.1094/PDIS-12-23-2810-PDN

Sahu, A.K., V. Pandey., A. Srivastava., R.K.Verma., N.S. Mishra., A. Ali^*, and R. K. Gaur. 2024. Molecular characterization of a bipartite begomovirus associated with leaf crinkle and curling symptoms of Duranta erecta in India. Indian Phytopathology, 77:191-201. https://link.springer.com/article/10.1007/s42360-024-00718-0

Srivastava, A., Pandey, V., Marwal, A., A. Ali and R.K.Guar. 2024. In-silico prediction and validation of Carica papaya protein domains interaction with the Papaya leaf curl virus and associated betasatellite encoded protein. Discover Appl Sci, 6:287. https://link.springer.com/article/10.1007/s42452-024-05961-8

Verma, R. K., Megha, M., Avinash, M., A. Ali*., Nikolay, M.P. and R. K. Gaur* 2024. CRISPR/Cas9 Protection System for Chilli Leaf Curl Virus. Acta Microbiologica Bulgarica 40(1): 112-115. https://doi.org/10.59393/amb24400114

Mokhtari, S., and A. Ali. 2024. Improved double-stranded RNA extraction and hyphal tip-touch techniques for the detection of mycoviruses.
PhytoFrontiers, 4(3): 319-327. https://doi.org/10.1094/PHYTOFR-08-23-0103-R

Ferguson, C and A. Ali. 2024. Global genetic diversity of Tobacco ringspot virus including newly reported isolates from cotton (Gossypium hirsutum L.)
in Oklahoma. Plant Disease, 108(3): 635-646. https://doi.org/10.1094/PDIS-07-23-1251-RE.

Ferguson C and A. Ali 2023. Cotton blue disease from Africa and its de facto relationship with cotton leafroll dwarf virus: a misleading etiological discrepancy. Front. Virol. 3:1253174. doi: 10.3389/fviro.2023.1253174

Ali^*, A. 2023. Challenges in the diagnosis of cotton diseases – A special reference to viruses. Cotton Innovation, 3(3):14-16.

Mokhtari, S., and A. Ali^*. 2023. Identification and complete genome sequence of an alternavirus from a pathogenic fungus Fusarium nanum. PhytoFrontiers, 3(2): 278-283. https://doi.org/10.1094/PHYTOFR-10-22-0109-SC

Gaur, R.K., Ali, A., Cheng, X., Agindotan, B.O., and Wang. X. 2023. Community series in plant viruses: Molecular plant virus epidemiology and its management, volume III. Front. Microbiol. 14:1125486. https://doi.org/10.3389/fmicb.2023.1125486

Gilford, C and A. Ali^*. 2022. First Report of Watermelon crinkle leaf-associated virus 2 infecting watermelon (Citrullus lanatus) in Oklahoma. Plant Disease, 107 (3):973. https://doi.org/10.1094/PDIS-05-22-1238-PDN

Mokhtari, S., M. Chavez, and A. Ali^*. 2022. First Report of Fusarium oxysporum f. sp. vasinfectum causing Fusarium Wilt of Cotton in Kansas, U.S.A. Plant Disease 107 (4):1239. https://doi.org/10.1094/PDIS-08-22-1808-PDN

Paslay, C and A. Ali^*. 2022. First Report of Tomato Yellow Leaf Curl Virus Infecting Pepper and Tomato in Oklahoma. Plant Disease, 107 (3):973. https://doi.org/10.1094/PDIS-04-22-0927-PDN

Ferguson, C and A. Ali^*. 2022.Complete Genome Sequence of Cotton Leafroll Dwarf Virus Infecting Cotton in Oklahoma, USA. Microbiology Resource Announcement 11(7): e00147-22. https://journals.asm.org/doi/epub/10.1128/mra.00147-22

Wagner, T. A., A.A Bell, Z. A. Castles, A. Ali, O. Flores, and J. Liu. 2022. Detection, genotyping, and virulence characterization of Fusarium wilt race 4 (VCG0114) causing cotton wilt in three Texas fields. J. of Phytopathology 170 (7-8) 492-503. https://doi.org/10.1111/jph.13100

Ferguson, C and A. Ali^*. 2022.First Report of Tobacco Ringspot Virus Naturally Infecting Cotton (Gossypium hirsutum L.) in the United States. Plant Disease, 106(10) 2764. https://doi.org/10.1094/PDIS-02-22-0303-PDN

Srivastava, A., V. Pandey, R. K. Verma, A. Marwal, R. Briddon, A. Ali^*. and R.K. Gaur^*. 2022. First complete genome sequence of Tomato leaf curl virus (ToLCV) from Salvia splendens in India. Journal of Phytopathology 170 (7-8): 479-491. https://doi.org/10.1111/jph.13099

Mishra, M., R. K. Verma, V. Pandy, A. Srivastava, P. Kumar, R.K. Gaur*, and A. Ali* (2022). Role of diversity and recombination
in the emergence of Chilli leaf curl virus. Pathogen, 11 (5): 529. doi: 10.3390/pathogens11050529

Shabeer S., S. Asad, A. Jamal*. and A. Ali*. 2022. Alatoxin contamination, its impact and management strategies: An updated review.
Toxins, 14:307. https://www.mdpi.com/2072-6651/14/5/307.

Davalos, N., Wells, H. and A. Ali*. 2022. Preliminary Study of Viruses Infecting Strawberry (Fragaria spp.) in the Mid-Southern United States.
Plant Health Progress, 23: 7-13. https://doi.org/10.1094/PHP-01-21-0015-RS

Songserm N, Woradet S, Kankarn W, Pintakham K, Vanhnivongkham P, Uyen NTT, Nguyen, C.C., Le, N.C., Banchob, S. and A. Ali. 2022. Cholangiocarcinoma protective factors in Greater Mekong Subregion: Critical issues for joint planning to sustainably solve regional public health problems. PLoS ONE 17(1): e0262589. https://doi. org/10.1371/journal.pone.0262589

Ali A*, Gaur RK, Wang X, Cheng X and Mäkinen K. 2021. Editorial: Plant Viruses, Volume I: Detection Methods, Genetic Diversity, and
Evolution. Front. Microbiology. 12:793071. doi: 10.3389/fmicb.2021.793071

Gaur RK, A. Ali, Cheng X, Mäkinen K, Agindotan B and Wang X.2021. Editorial: Plant Viruses, Volume II: Molecular Plant Virus
Epidemiology and Its Management. Front. Microbiology. 12:756807. doi: 10.3389/fmicb.2021.756807.

Khanal, V and A. Ali* 2021. High Mutation Frequency and Significant Population Differentiation in Papaya Ringspot Virus-W
Isolates. Pathogens 10, 1278.https://doi.org/10.3390/pathogens10101278.

Abdalla, O.A.; and A. Ali*. 2021. Genetic Variability and Evidence of a New Subgroup in Watermelon Mosaic Virus Isolates. Pathogens,
10, 1245. DOI: 10.3390/pathogens10101245

Wijayasekara, D., and A. Ali*. 2021. Evolutionary study of maize dwarf mosaic virus using nearly complete genome sequences
acquired by next generation sequencing. Scientific Reports | 11:18786. https://doi.org/10.1038/s41598-021-98299-9

Nopparat, S., P. Korsura, S. Woradet, A. Ali. 2021. Risk Communication Through Health Beliefs for Preventing Opisthorchiasis-Linked
Cholangiocarcinoma: A Community- Based Intervention in Multicultural Areas of Thailand. Asian Pac J Cancer Prev, 22 (10), 3181-3187

Nopparat, S., S. Butprom, C. Thongchai, M. Ruksilp, P. Charoenbut, S. Woradet, T. Souvanaa, V. Buonhoseng A.Ali. 2021. Effectiveness of Village
Health Volunteer Parallel Program for Proactive Action to Reduce Risk Factors for Cholangiocarcinoma in Two High-Risk Countries in the Greater Mekong Subregion, Nutrition and Cancer, DOI: 10.1080/01635581.2021.1957949

Nopparat, S. W. Namwong, S. Woradet, B. Sripa, A. Ali. 2021. Public health interventions for preventing re-infection of Opisthorchis
viverrini: application of the self-efficacy theory and group process in high-prevalent areas of Thailand. Tropical Medicine and International health, 26(8) 962-972.

Khanal, V., H. Wells, and A. Ali*. 2021. High Prevalence of Three Potyviruses Infecting Cucurbits in Oklahoma and Phylogenetic
Analysis of Cucurbit Aphid-Borne Yellows Virus Isolated from Pumpkins. Pathogens 10, 53. https://doi.org/10.3390/pathogens10010053.

Ali*, A. M. Samira, Connor Ferguson. 2020. First report of Cotton leafroll dwarf virus-from cotton (Gossypium hirsutum L.) in Oklahoma.
Plant Disease 104: 2531.

Ali*, A. and M. Samira. 2020. First report of Cotton leafroll dwarf virus-infecting cotton (Gossypium hirsutum L.) in Kansas. Plant Disease 104: 1880.

Ali*, A. and M. Samira. 2020. First complete genome sequence of Cotton leafroll dwarf virus from cotton in Texas, USA Microbiology
Resources Announcement 9:e01587-19. https://doi.org/10.1128/MRA.01587-19.

Nopparat, S. S. Woradet, O. Bureelerd, C. Thongchai, S. Thongprung, A. Ali. 2020. Effectiveness of Leader Village Health Volunteers
Training Program on Preventing Cholangiocarcinoma in Thailand: Advantages for High-Risk Area with Limited Public Health Personnel.
Journal of Cancer Education. https://doi.org/10.1007/s13187-020-01768-4

Nopparat, S. S. Woradet, B. Sripa, A. Ali. 2020. Sustainable Prevention of Cholangiocarcinoma Through Community Participation in a
High-incidence Area in Thailand. Asian Pacific Journal of Cancer Prevention, 21:777-782.

Wijayasekara, D. and A. Ali*. 2020. Complete genome characterization and coat protein genealogy of isolates of Maize dwarf mosaic
virus from Johnsongrass and maize in Oklahoma and Missouri. Plant Disease 104:1214-1223.

Helen M. Alexander, Janette A. Steets, and A. Ali* 2020. Distribution of Asclepius asymptomatic virus and exploration of possible effects
on the wild plant host, Asclepius viridis. Plant Health Progress 21:54-59.

Wijayasekara, D., F. Connor and A. Ali*. 2019. First report of Garlic Virus C occurring on garlic plants (Allium sativum) with various
mosaic-like symptoms, in the USA. Plant Disease 103: 3292.

Rajbanshi, N. and A. Ali*. 2019. Simultaneous detection of three common potyviruses infecting cucurbits by multiplex reverse transcription
polymerase chain reaction assay. Journal of Virological Methods 273:113725.

A. Ali and Ulrich Melcher. 2019. Modelling of Mutational Events in the Evolution of Viruses. Viruses, 11:(5), 418; https://doi.org/10.3390/v11050418.

Wijayasekara, D. and A. Ali*. 2019. First report of Garlic common latent virus infecting Garlic in Oklahoma. Plant Disease, 103: 1049.

Khanal, V. and A. Ali*. 2019. First complete genome sequence of Cucurbit aphid borne yellows virus infecting pumpkins
in Oklahoma. Microbiology Resource Announcement, 8:e01448-18

Khanal, V. and A. Ali*. 2019. Complete genome sequence of a Zucchini yellow mosaic virus isolated from pumpkin
in Oklahoma. Microbiology Resource Announcement, 8:e01583-18.

Ali*, A. and M. Samira. 2020. First complete genome sequence of Cotton leafroll dwarf virus from cotton in
Texas, USA Microbiology Resources Announcement 9:e01587-19.

Nopparat, S. S. Woradet, B. Sripa, A. Ali (2020). Sustainable Prevention of Cholangiocarcinoma Through Community Participation
in a High-incidence Area in Thailand. Asian Pacific Journal of Cancer Prevention, 21:777-782.

Wijayasekara, D. and A. Ali*. 2020. Complete genome characterization and coat protein genealogy of isolates of Maize dwarf mosaic
virus from Johnsongrass and maize in Oklahoma and Missouri. Plant Disease 104:1214-1223.

Helen M. Alexander, Janette A. Steets, and A. Ali* 2020. Distribution of Asclepias asymptomatic virus and exploration of possible
effects on the wild plant host, Asclepias viridis. Plant Health Progress 21:54-59.

Wijayasekara, D., F. Connor and A. Ali*. 2019. First report of Garlic Virus C occurring on garlic plants (Allium sativum) with various
mosaic-like symptoms, in the USA. Plant Disease 103: 3292.

Rajbanshi, N. and A. Ali*. 2019. Simultaneous detection of three common potyviruses infecting cucurbits by multiplex reverse transcription
polymerase chain reaction assay. Journal of Virological Methods 273:113725.

A. Ali* and Ulrich Melcher. 2019. Modelling of Mutational Events in the Evolution of Viruses. Viruses, 11:(5), 418.

Wijayasekara, D. and A. Ali*. 2019. First report of Garlic common latent virus infecting Garlic in Oklahoma. Plant Disease In press.

Khanal, V. and A. Ali.* 2019. First complete genome sequence of Cucurbit aphid borne yellows virus infecting pumpkins in Oklahoma.
Microbiol Resour Announc 8:e01583-18

Khanal, V. and A. Ali.* 2019. Complete genome sequence of a Zucchini yellow mosaic virus isolated from pumpkin in Oklahoma.
Microbiol Resour Announc 8:e01583-18. https://doi.org/10.1128/MRA.01583-18.

Promthet, S. Songserm, N. Woradet, S. Pientong, C. Ekalaksananan, T. Wiangnon, S. Ali, A. 2018. Opisthorchiasis with proinflammatory
cytokines(1L-1B and TNF-a) polymorphisms influence risk of intrahepatic cholangiocarcinoma in Thailand: a nested case-control study.
BMC Cancer 18:846.

Secrist, K. and A. Ali*. 2018. First complete genome sequence of Pepper mild mottle virus in the United States.
Genome Annoucment 6:e00331-18. https://doi.org/10.1128/genomeA.00331-18.

Ali, A. and M. J. Roossinck. 2018. Analysis of quasispecies variation in single and mixed viral infection. Virus Evolution 3(2): vex037.

Khanal, V. and A. Ali.* 2018. First report of Cucurbit aphid borne yellow virus infecting pumpkins in Oklahoma. Plant Disease 102(5):1046.

Abdalla, O. A. and A. Ali*. 2018. Molecular characterization reveals that Squash chlorosis mottling virus and Zucchini tigré mosaic virus
are the same newly emerging potyvirus. Archives of Virology 163:777-780.

Ali*, A. 2017. Rapid detection of fifteen known soybean viruses by dot-immunobinding assay. Journal of Virological Methods. 249: 126-129.

Ali*, A. and K. Hake. 2017. Early warning and remedies for emerging pests in cotton with emphasis on viruses.
The ICAC Recorder XXXV (1): 17-19.

Wijayasekara, D. and A. Ali*. 2017. First report of Maize dwarf mosaic virus in Johnson grass in Oklahoma. Plant Disease 101:850.

Ali*, A. 2017. First complete genome sequence of Papaya ringspot virus-W isolated from a gourd in the United States.
Genome Announc 5(2):e01434-16. https://doi.org/10.1128/ genomeA.01434-16.

Rajbanshi, N. and A. Ali*. 2016. First complete genome sequence of Watermelon mosaic virus isolated from watermelon in the United States.
Genome Announcements 4(2):e00299-16. doi:10.1128/genomeA.00299-16.

Ali*, A. and I. Ali. 2015. The Complete genome phylogeny of geographically distinct Dengue virus serotype 2 isolates (1944-2013) supports further groupings in cosmopolitan genotype. Plos One September 28, 2015. DOI:10.1371/journal.pone.0138900

Mukta, D. A. Ali and U. Melcher. 2015. Detection, discrimination and discovery of a new Tobacco streak virus strain.
Journal of Virological Methods 22: 15-21.

I. Ali and A. Ali*. 2015. First report of Pepper mild mottle virus in peppers in Oklahoma. Plant Disease 99:736.

Ali,* A. and O. A. Abdalla. 2013. First report of Soybean vein necrosis virus in soybean fields of Oklahoma. Plant Disease 97: 1664.

Abdalla, A. O. and A. Ali*. 2013. First report of a novel Potyvirus from Florida causing chlorotic mottling in squash (Cucurbita pepo).
Plant Disease 97: 1259.

Ali,* A., O. A. Abdalla., B. D. Bruton., W. W. Fish., E. Sikora, S. Zhang, and M. Taylor. 2012. Occurrence of viruses infecting watermelon,
other cucurbits and weeds in the parts of southern United States. Plant Health Progress (doi:10.1094/PHP-2012-0824-01-RS)

Abdalla, O. A., B. D. Bruton, W. W. Fish, and A. Ali*. 2012. First confirmed report of Tobacco ringspot virus in cucurbits in Oklahoma.
Plant Disease 96: 1705.

Abdalla, O. A. and A. Ali*. 2012. First report of Alfalfa mosaic virus associated with severe mosaic and mottling of pepper (Capsicum annum)
and white clover (Trifolium repens) in Oklahoma. Plant Disease 96: 1705.

Abdalla, O. A. and A. Ali.* 2012. Genetic diversity in the 3’-terminal regions of Papaya ringspot virus (PRSV-W) isolated from watermelon in Oklahoma.
Arch. Virology 157:405-412.

Min, B. E, T. S. Feldman, A. Ali, W. G. Wiley, V. Muthukumar, B. A. Roe, M. J. Roossinck, U.Melcher, M. W. Palmer, and R. S. Nelson. 2012.
Molecular characterization, ecology and epidemiology of a novel tymovirus in Asclepias viridis from Oklahoma. Phytopathology 102: 166-176.

Ali,* A., O. Mohammad. and A. Khattab. 2012. Distribution of viruses infecting cucurbit crops and isolation of potential new virus-like sequences
from weeds in Oklahoma. Plant Disease 96: 243-248.

Ali,* A., M. Shafiekhani and J. Olsen 2011. Molecular characterization of the complete genomes of two new field isolates of Cowpea chlorotic mottle virus,
and their phylogenetic analysis. Virus Genes 43: 120-129.

Ali, A. and M. J. Roossinck. 2010. Genetic bottlenecks during systemic movement of Cucumber mosaic virus vary in different host plants.
Virology 404:279-283.

Ali,* A. and M. Kobayahsi. 2010. Seed transmission of Cucumber mosaic virus in pepper. J. Virol. Methods 163:234-237.

Vijay, M., U. Melcher., M. Pierce., G. B. Wiley., M. W. Palmer., V. Thapa., A. Ali., T. Ding. 2009. Non-cultivated plants of the Tallgrass Prairie Preserve
of north-eastern Oklahoma frequently contain virus-like sequences in particulate fractions. Virus Research 141: 169-173.

Ali,* A. and M. J. Roossinck. 2008. A simple technique for separation of Cowpea chlorotic mottle virus from Cucumber mosaic virus
in natural mixed infections. J. Virol. Methods 153: 163-167.

Melcher, U, V. Muthukumar, G. B. Wiley, B. Eun Min, M. W. Palmer, J.Verchot-Lubicz, A. Ali, R.S. Nelson, B.A, Roe, V. Thapa, and M. L. Pierce.2008.
Evidence for novel viruses by analysis of nucleic acids in virus-like particle fractions from Ambrosia psilostachya. J. Virol. Methods 152: 49-55.

Ali,* A. and M. J. Roossinck. 2007. Rapid and efficient purification of Cowpea chlorotic mottle virus by sucrose cushion ultracentrifugation.
J. Virol. Methods 141:84-86.

Ali,*A., A. Reddall, J. Roberts, L. J. Wilson, and M. A. Rezaian. 2007. Cytopathology, mode of aphid transmission and search for the casual agent of Cotton bunchy top disease. J. Phytopathology 155: 220-227.

Ali, A., H.Li, W. L. Schneider, D. J. Sherman, S. Gray, D. Smith and M. J. Roossinck. 2006. Analysis of genetic bottlenecks during horizontal transmission of Cucumber mosaic virus. J. Virology 80: 8345-8350.

Reddall, A., A. Ali., J. A. Able, J. Stonor, L., Tesoriero, P. R. Wright, M. A. Rezaian and L. J. Wilson. 2004. Cotton bunchy top (CBT): an aphid
and graft transmitted cotton syndrome. Australian Plant Pathol, 33:197-202.

Ali. G.S., A. Ali., M. Shafiq, and S. Hassan. 1993. Evaluation of indirect and two-step ELISA for the detection of Beet curly top,
Beet western yellows and Cucumber mosaic virus in sugar beet. Sarhad J. Agric, 9:224-227.

Haque, G., S. Hassan., A. Ali., and M. Arif. 1993. Control of Soybean mosaic virus through thermotherapy. Sarhad J. Agric, Vol. IX (2):177-180.

Haque, G., M. Arif., S. Hassan., A. Ali., and M. Khan. 1993. Assessments of yield losses in soybean due to Soybean mosaic virus.
Sarhad J. Agric, Vol. IX (3):227-229.

Khattak. I., S. Hussain., A. Ali., and S. J. A. Shah. 1993. Efficacy of various methods employed for the study of seedborne mycoflora of soybean.
Sarhad J. Agric, Vol. IX (1):45-48.

Gul, A., A. Ali., and M. Karimullah. 1993. Reaction of different tobacco varieties against root-knot nematode (Meloidogyne javanica).
Pak. J. Phytopathology, 5: 35-40.

Ali,*A., and S. Hassan. 1992. Biological characterization of Soybean mosaic virus. Sarhad J. Agric, Vol. VIII (5): 555-561.

Shah, S.J.A., S. Hussain., A. Ali., and I. Khattak. 1992. Effect of different seed dressing fungicides on germination and yield components of soybean.
Sarhad J. Agric, Vol. VIII (6): 679-682.

Shah, S.J.A., S. Hussain., A. Ali., and I. Khattak. 1992. Efficacy of different seed dressing fungicides on recovery of seedborne mycoflora of soybean.
Sarhad J. Agric, Vol. VIII (6): 683-687.

Khattak. I., S. Hussain., A. Ali., and S. J. A. Shah. 1992. Effect of different incubation temperatures on the growth of seedborne mycoflora of soybean. J. Science & Technology, University of Peshawar, 16: 13-16.

Books

Ali, A. and R. K. Gaur. 2024. Pepper virome: Molecular Biology, Diagnostics and Management” Imprint: Academic Press (Elsevier), (ISBN: 9780443155765). No. of pages 489. (In press- tentative date for publication- April, 26 2024). https://shop.elsevier.com/books/pepper-virome/ali/978-0-443-15576-5

Book Chapters

Ali, A. 2024. An overview of RNA viruses infecting pepper, In: “Pepper virome: Molecular Biology, Diagnostics and Management” (ed A. Ali, and R.K.Gaur).   Imprint: Academic Press (Elsevier), (ISBN: 9780443155765). Chapter 2, pp 65-98.

Paslay, C and A. Ali^*. 2024. Diagnosis, genetic diversity and molecular characterization of geminiviruses infecting pepper. In: “Pepper virome: Molecular Biology, Diagnostics and Management” (ed A. Ali, and R.K.Gaur).   Imprint: Academic Press (Elsevier), (ISBN: 9780443155765). Chapter 6, pp 195-219.

Connor, F and A. Ali^*. 2024. Virus vector interaction and transmission. In: “Pepper virome: Molecular Biology, Diagnostics and Management” (ed A. Ali, and R.K.Gaur).   Imprint: Academic Press (Elsevier), (ISBN: 9780443155765). Chapter 9, pp 277-299.

Connor, F and A. Ali^*. 2024. Virus Management: Traditional and Modern. In: “Pepper virome: Molecular Biology, Diagnostics and Management” (ed A. Ali, and R.K.Gaur).   Imprint: Academic Press (Elsevier), (ISBN: 9780443155765). Chapter 14, pp 409-433.

Pandey, V., A. Srivastava, A. Ali and R.K. Gaur. 2024. Chilli leaf curl disease: status and strategies for sustainable management. In: “Pepper virome: Molecular Biology, Diagnostics and Management” (ed A. Ali, and R.K.Gaur).   Imprint: Academic Press (Elsevier), (ISBN: 9780443155765). Chapter 16, pp 477-489.

Ali, A^*. 2023. Single stranded RNA virus infecting cucurbits. In“Plant RNA viruses” (ed Rajarshi, Basavaprabhu Patil and R. Selvarajan). Elsevier Inc. Publisher the USA. Chapter 2, pp 39-56.

Ali, A.. 2023. Potato virus Y. In “Viral Diseases of Field and Horticultural Crops” (ed (ed L.P. Awasthi), Elsevier Inc. Publisher the USA. Chapter 2, Pages: 39-56.

Ali, A.. 2020. “Fungal viruses: An unlikely Ally”. In “Applied Plant Virology: Advances, Detection and Antiviral Strategies” (ed L.P. Awasthi).
Academic Press, (Elsevier, Inc.), Chapter 17, pp 229-236.

Ali, A.. 2020. Epidemiology and evolution of poytviruses infecting cucurbits. In “Applied Plant Virology: Advances, Detection and Antiviral Strategies”
(ed L.P. Awasthi). Academic Press, (Elsevier, Inc.), Chapter 28, pp 405-417.

Melcher, U and A. Ali. 2018. Virus-virus interaction in plants. In “Plant Viruses: Diversity, Host Interaction and Management”
(eds R. K. Gaur, S.M.P. Khurana and Y. L. Dorokhov). CRC Press (Taylor & Francis Group). Chapter 15, pp 249-266.

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